eland/tests/common.py
Bart Broere 75c57b0775
Support Pandas 2 (#742)
* Fix test setup to match pandas 2.0 demands

* Use the now deprecated _append method

(Better solution might exist)

* Deal with numeric_only being removed in metrics test

* Skip mad metric for other pandas versions

* Account for differences between pandas versions in describe methods

* Run black

* Check Pandas version first

* Mirror behaviour of installed Pandas version when running value_counts

* Allow passing arguments to the individual asserters

* Fix for method _construct_axes_from_arguments no longer existing

* Skip mad metric if it does not exist

* Account for pandas 2.0 timestamp default behaviour

* Deal with empty vs other inferred data types

* Account for default datetime precision change

* Run Black

* Solution for differences in inferred_type only

* Fix csv and json issues

* Skip two doctests

* Passing a set as indexer is no longer allowed

* Don't validate output where it differs between Pandas versions in the environment

* Update test matrix and packaging metadata

* Update version of Python in the docs

* Update Python version in demo notebook

* Match noxfile

* Symmetry

* Fix trailing comma in JSON

* Revert some changes in setup.py to fix building the documentation

* Revert "Revert some changes in setup.py to fix building the documentation"

This reverts commit ea9879753129d8d8390b3cbbce57155a8b4fb346.

* Use PANDAS_VERSION from eland.common

* Still skip the doctest, but make the output pandas 2 instead of 1

* Still skip doctest, but switch to pandas 2 output

* Prepare for pandas 3

* Reference the right column

* Ignore output in tests but switch to pandas 2 output

* Add line comment about NBVAL_IGNORE_OUTPUT

* Restore missing line and add stderr cell

* Use non-private method instead

* Fix indentation and parameter issues

* If index is not specified, and pandas 1 is present, set it to True

From pandas 2 and upwards, index is set to None by default

* Run black

* Newer version of black might have different opinions?

* Add line comment

* Remove unused import

* Add reason for ignore statement

* Add reason for skip

---------

Co-authored-by: Quentin Pradet <quentin.pradet@elastic.co>
2025-02-04 17:43:43 +04:00

153 lines
5.2 KiB
Python

# Licensed to Elasticsearch B.V. under one or more contributor
# license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright
# ownership. Elasticsearch B.V. licenses this file to you under
# the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
import gzip
import json
import os
from datetime import timedelta
import pandas as pd
from pandas.testing import assert_frame_equal, assert_series_equal
import eland as ed
from eland.common import PANDAS_VERSION
ROOT_DIR = os.path.dirname(os.path.abspath(__file__))
# Create pandas and eland data frames
from tests import (
ECOMMERCE_DF_FILE_NAME,
ECOMMERCE_INDEX_NAME,
ES_TEST_CLIENT,
FLIGHTS_FILE_NAME,
FLIGHTS_INDEX_NAME,
FLIGHTS_SMALL_INDEX_NAME,
)
_ed_flights = ed.DataFrame(ES_TEST_CLIENT, FLIGHTS_INDEX_NAME)
flight_records = []
with gzip.open(FLIGHTS_FILE_NAME) as f:
for json_obj in f:
flight_records.append(json.loads(json_obj))
_pd_flights = pd.DataFrame.from_records(flight_records).reindex(
_ed_flights.columns, axis=1
)
if PANDAS_VERSION[0] >= 2:
_pd_flights["timestamp"] = pd.to_datetime(_pd_flights["timestamp"], format="mixed")
else:
_pd_flights["timestamp"] = pd.to_datetime(_pd_flights["timestamp"])
# Mimic what copy_to in an Elasticsearch mapping would do, combining the two fields in a list
_pd_flights["Cities"] = _pd_flights.apply(
lambda x: list(sorted([x["OriginCityName"], x["DestCityName"]])), axis=1
)
_pd_flights.index = _pd_flights.index.map(str) # make index 'object' not int
_pd_flights_small = _pd_flights.head(48)
_ed_flights_small = ed.DataFrame(ES_TEST_CLIENT, FLIGHTS_SMALL_INDEX_NAME)
_pd_ecommerce = pd.read_json(ECOMMERCE_DF_FILE_NAME).sort_index()
_pd_ecommerce["order_date"] = pd.to_datetime(_pd_ecommerce["order_date"])
_pd_ecommerce["products.created_on"] = _pd_ecommerce["products.created_on"].apply(
lambda x: pd.to_datetime(x)
)
_pd_ecommerce.insert(2, "customer_birth_date", None)
_pd_ecommerce.index = _pd_ecommerce.index.map(str) # make index 'object' not int
_pd_ecommerce["customer_birth_date"].astype("datetime64[ns]")
_ed_ecommerce = ed.DataFrame(ES_TEST_CLIENT, ECOMMERCE_INDEX_NAME)
class TestData:
client = ES_TEST_CLIENT
def pd_flights(self):
return _pd_flights
def ed_flights(self):
return _ed_flights
def pd_flights_small(self):
return _pd_flights_small
def ed_flights_small(self):
return _ed_flights_small
def pd_ecommerce(self):
return _pd_ecommerce
def ed_ecommerce(self):
return _ed_ecommerce
def assert_pandas_eland_frame_equal(left, right, **kwargs):
if not isinstance(left, pd.DataFrame):
raise AssertionError(f"Expected type pd.DataFrame, found {type(left)} instead")
if not isinstance(right, ed.DataFrame):
raise AssertionError(f"Expected type ed.DataFrame, found {type(right)} instead")
# Use pandas tests to check similarity
assert_frame_equal(left, right.to_pandas(), **kwargs)
def assert_eland_frame_equal(left, right, **kwargs):
if not isinstance(left, ed.DataFrame):
raise AssertionError(f"Expected type ed.DataFrame, found {type(left)} instead")
if not isinstance(right, ed.DataFrame):
raise AssertionError(f"Expected type ed.DataFrame, found {type(right)} instead")
# Use pandas tests to check similarity
assert_frame_equal(left.to_pandas(), right.to_pandas(), **kwargs)
def assert_pandas_eland_series_equal(left, right, **kwargs):
if not isinstance(left, pd.Series):
raise AssertionError(f"Expected type pd.Series, found {type(left)} instead")
if not isinstance(right, ed.Series):
raise AssertionError(f"Expected type ed.Series, found {type(right)} instead")
# Use pandas tests to check similarity
assert_series_equal(left, right.to_pandas(), **kwargs)
def assert_almost_equal(left, right, **kwargs):
"""Asserts left and right are almost equal. Left and right
can be scalars, series, dataframes, etc
"""
if isinstance(left, (ed.DataFrame, ed.Series)):
left = left.to_pandas()
if isinstance(right, (ed.DataFrame, ed.Series)):
right = right.to_pandas()
if isinstance(right, pd.DataFrame):
kwargs.setdefault("check_exact", True)
assert_frame_equal(left, right)
elif isinstance(right, pd.Series):
kwargs.setdefault("check_exact", True)
assert_series_equal(left, right)
elif isinstance(right, float):
assert right * 0.99 <= left <= right * 1.01
elif isinstance(right, pd.Timestamp):
assert isinstance(left, pd.Timestamp) and right - timedelta(
seconds=0.1
) < left < right + timedelta(seconds=0.1)
elif right is pd.NaT:
assert left is pd.NaT
else:
assert left == right, f"{left} != {right}"